Transcript: ENSDART00000138071.2 npsn-203

Description

nephrosin [Source:ZFIN;Acc:ZDB-GENE-040420-2]

Gene Synonyms

ZC6AST2, npsnl, zgc:110470, zgc:152831

Location

Chromosome 7: 38,655,167-38,659,477 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 16 domains and features, is associated with 7 variant alleles and maps to 140 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000010423.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000109463.5	npsn-202	919	280aa	ENSDARP00000100461.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1REP3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000017155.8	npsn-201	1385	274aa	ENSDARP00000012180.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q05AP0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000138071.2	npsn-203	922	272aa	ENSDARP00000112570.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QE40	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000148018.2	npsn-204	864	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 922 bps, Translation length: 272 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000138071.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000138071.2 npsn-203

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Transcript: ENSDART00000138071.2 npsn-203

Summary

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