Transcript: ENSDART00000138059.2 PTPRK-202

Description

protein tyrosine phosphatase receptor type K [Source:ZFIN;Acc:ZDB-GENE-030131-9834]

Location

Chromosome 20: 1,443,999-1,454,131 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 12 domains and features, is associated with 346 variant alleles and maps to 178 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000063416.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000133369.3	PTPRK-201	3595	1163aa	ENSDARP00000117401.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000092508.7	PTPRK-204	4547	1153aa	ENSDARP00000086940.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000179193.2	PTPRK-205	3384	1127aa	ENSDARP00000144409.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000138059.2	PTPRK-202	604	202aa	ENSDARP00000115454.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000141156.2	PTPRK-203	845	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 604 bps, Translation length: 202 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000138059.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000138059.2 PTPRK-202

Summary

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Transcript: ENSDART00000138059.2 PTPRK-202

Summary

About Us

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