Transcript: ENSDART00000137869.2 synpo2b-202

Description

synaptopodin 2b [Source:ZFIN;Acc:ZDB-GENE-101230-1]

Location

Chromosome 1: 25,961,376-25,966,068 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 18 domains and features, is associated with 50 variant alleles and maps to 115 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000077157.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000193375.1	synpo2b-203	3309	660aa	ENSDARP00000152411.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000137869.2	synpo2b-202	3141	617aa	ENSDARP00000113396.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QFY4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000134192.2	synpo2b-201	833	151aa	ENSDARP00000117241.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 3,141 bps, Translation length: 617 residues

Version

ENSDART00000137869.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000137869.2 synpo2b-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000137869.2 synpo2b-202

Summary

About Us

Get help

Our sister sites

Follow us