Transcript: ENSDART00000137487.3 bcat1-202

Description

branched chain amino-acid transaminase 1, cytosolic [Source:ZFIN;Acc:ZDB-GENE-030131-9358]

Gene Synonyms

fj66g02, wu:fj66g02, zgc:73157

Location

Chromosome 4: 17,280,028-17,289,020 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 5 domains and features, is associated with 292 variant alleles and maps to 147 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000045568.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000067005.5	bcat1-201	2001	385aa	ENSDARP00000067004.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5RHB8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000145349.2	bcat1-205	785	248aa	ENSDARP00000117796.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5PML4	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000137487.3	bcat1-202	780	223aa	ENSDARP00000115866.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5PML5	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000138956.2	bcat1-203	832	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000144647.2	bcat1-204	501	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 780 bps, Translation length: 223 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000137487.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000137487.3 bcat1-202

Summary

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Transcript: ENSDART00000137487.3 bcat1-202

Summary

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