Transcript: ENSDART00000137467.3 SHLD2-201

Description

shieldin complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-090313-30]

Location

About this transcript

This transcript has 9 exons, is annotated with 13 domains and features, is associated with 207 variant alleles and maps to 206 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000137467.3	SHLD2-201	2820	784aa	ENSDARP00000117245.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A4B1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000132847.2	SHLD2-203	841	218aa	ENSDARP00000112563.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000131696.2	SHLD2-202	3097	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 2,820 bps, Translation length: 784 residues

Version

ENSDART00000137467.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.