Transcript: ENSDART00000137451.2 hmgb2a-202

Description

high mobility group box 2a [Source:ZFIN;Acc:ZDB-GENE-051120-126]

Gene Synonyms

hmgb2, wu:fb22b10, wu:fc95d12, zgc:123215

Location

Chromosome 1: 38,169,816-38,171,648 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 21 domains and features, is associated with 16 variant alleles and maps to 136 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000029722.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000047159.7	hmgb2a-201	1237	213aa	ENSDARP00000047158.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8JL29	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000137451.2	hmgb2a-202	862	174aa	ENSDARP00000123575.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8JL30	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000142811.2	hmgb2a-204	377	91aa	ENSDARP00000114997.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8JL31	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000142060.2	hmgb2a-203	269	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 862 bps, Translation length: 174 residues

Version

ENSDART00000137451.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000137451.2 hmgb2a-202

Summary

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Transcript: ENSDART00000137451.2 hmgb2a-202

Summary

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