Transcript: ENSDART00000137236.3 HPCAL1-201

Description

hippocalcin-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1242]

Location

About this transcript

This transcript has 4 exons, is annotated with 24 domains and features, is associated with 631 variant alleles and maps to 157 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000137236.3	HPCAL1-201	1791	193aa	ENSDARP00000114371.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7SXX4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000028471.5	HPCAL1-203	1476	193aa	ENSDARP00000038816.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7SXX4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000147045.2	HPCAL1-202	638	73aa	ENSDARP00000123526.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 1,791 bps, Translation length: 193 residues

Version

ENSDART00000137236.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.