Transcript: ENSDART00000137224.2 cxcl11.7-201

Description

chemokine (C-X-C motif) ligand 11, duplicate 7 [Source:ZFIN;Acc:ZDB-GENE-060526-79]

Location

About this transcript

This transcript has 4 exons, is annotated with 24 domains and features, is associated with 149 variant alleles and maps to 141 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000137224.2	cxcl11.7-201	514	121aa	ENSDARP00000116772.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B0R190	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000181939.1	cxcl11.7-202	366	121aa	ENSDARP00000147964.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9PYE3 B0R191	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 514 bps, Translation length: 121 residues

Version

ENSDART00000137224.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.