Transcript: ENSDART00000137102.2 si:dkey-217f16.6-202

Description

si:dkey-217f16.6 [Source:ZFIN;Acc:ZDB-GENE-091117-15]

Location

Chromosome 3: 2,602,638-2,613,990 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 8 domains and features, is associated with 3 variant alleles and maps to 143 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000076389.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000123512.3	si:dkey-217f16.6-201	2757	865aa	ENSDARP00000111218.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F339	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000179792.1	si:dkey-217f16.6-203	2670	836aa	ENSDARP00000150887.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8RQW3	-
ENSDART00000137102.2	si:dkey-217f16.6-202	832	278aa	ENSDARP00000122462.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QRP4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 832 bps, Translation length: 278 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000137102.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000137102.2 si:dkey-217f16.6-202

Summary

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Transcript: ENSDART00000137102.2 si:dkey-217f16.6-202

Summary

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