Transcript: ENSDART00000137053.2 tmx3a-201

Description

thioredoxin related transmembrane protein 3a [Source:ZFIN;Acc:ZDB-GENE-050522-396]

Gene Synonyms

tmx3, txndc10, zgc:110025

Location

Chromosome 2: 27,325,325-27,330,181 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 12 domains and features, is associated with 139 variant alleles and maps to 101 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000038894.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000145835.3	tmx3a-203	1573	437aa	ENSDARP00000114827.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A5U6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000187490.1	tmx3a-204	2349	438aa	ENSDARP00000152640.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QHZ9	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000137053.2	tmx3a-201	834	157aa	ENSDARP00000116552.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A5U7	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000141289.2	tmx3a-202	842	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 834 bps, Translation length: 157 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000137053.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000137053.2 tmx3a-201

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Transcript: ENSDART00000137053.2 tmx3a-201

Summary

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