Transcript: ENSDART00000136876.2 chd7-204

Description

chromodomain helicase DNA binding protein 7 [Source:ZFIN;Acc:ZDB-GENE-070912-179]

Gene Synonyms

si:ch211-197o6.2, wu:cegs2051, wu:fb37f10, wu:fb39h04, wu:fd19h06

Location

Chromosome 2: 21,767,736-21,768,555 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 90 variant alleles and maps to 119 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000075211.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000135230.2	chd7-203	10963	3140aa	ENSDARP00000114372.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QGL1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000016208.9	chd7-201	7281	2426aa	ENSDARP00000011638.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QQ92	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000121586.3	chd7-202	515	62aa	ENSDARP00000108570.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F766	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000136876.2	chd7-204	494	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 494 bps,

Version

ENSDART00000136876.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000136876.2 chd7-204

Summary

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Transcript: ENSDART00000136876.2 chd7-204

Summary

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