Transcript: ENSDART00000136873.3 CLASP2-209

Description

cytoplasmic linker associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2343]

Location

Chromosome 19: 42,693,855-42,802,298 forward strand.

About this transcript

This transcript has 37 exons, is annotated with 48 domains and features, is associated with 1576 variant alleles and maps to 238 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000020345.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000136873.3	CLASP2-209	5536	1476aa	ENSDARP00000117340.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000144557.3	CLASP2-201	4788	1288aa	ENSDARP00000113962.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NYW6	-
ENSDART00000139109.3	CLASP2-203	4501	1250aa	ENSDARP00000116634.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000180153.1	CLASP2-210	1155	384aa	ENSDARP00000152257.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000133711.2	CLASP2-204	832	277aa	ENSDARP00000125688.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000150930.2	CLASP2-207	708	236aa	ENSDARP00000126160.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000151086.2	CLASP2-202	236	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000138735.2	CLASP2-208	829	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000151023.2	CLASP2-206	625	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000151378.2	CLASP2-205	489	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 37, Coding exons: 37, Transcript length: 5,536 bps, Translation length: 1,476 residues

Version

ENSDART00000136873.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000136873.3 CLASP2-209

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Transcript: ENSDART00000136873.3 CLASP2-209

Summary

About Us

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