Transcript: ENSDART00000136729.2 ebf1b-202

Description

EBF transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090814-2]

Gene Synonyms

EBF1b, ebf1, si:ch211-119c24.3

Location

Chromosome 21: 33,724,979-33,851,877 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 15 domains and features, is associated with 857 variant alleles and maps to 83 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000069196.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000179622.2	ebf1b-203	2339	603aa	ENSDARP00000144554.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286YBI5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000100508.5	ebf1b-201	2302	591aa	ENSDARP00000091281.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F5K2	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000136729.2	ebf1b-202	1612	408aa	ENSDARP00000116056.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R6Z5	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 1,612 bps, Translation length: 408 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000136729.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000136729.2 ebf1b-202

Summary

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Transcript: ENSDART00000136729.2 ebf1b-202

Summary

About Us

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