Transcript: ENSDART00000136541.3 znf143b-203

Description

zinc finger protein 143b [Source:NCBI gene;Acc:393954]

Gene Synonyms

staf, zgc:66276, znf143

Location

Chromosome 18: 16,924,865-16,937,109 reverse strand.

About this transcript

This transcript has 16 exons, is annotated with 38 domains and features, is associated with 295 variant alleles and maps to 204 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000041581.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000136541.3	znf143b-203	2194	647aa	ENSDARP00000122626.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QUN1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000100117.3	znf143b-202	2718	581aa	ENSDARP00000090890.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6P0Y2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000022640.10	znf143b-201	2712	623aa	ENSDARP00000009795.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LYE3	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 2,194 bps, Translation length: 647 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000136541.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000136541.3 znf143b-203

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Transcript: ENSDART00000136541.3 znf143b-203

Summary

About Us

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