Transcript: ENSDART00000136538.3 cish-202

Description

cytokine inducible SH2-containing protein [Source:ZFIN;Acc:ZDB-GENE-050907-1]

Gene Synonyms

wu:fk57g04, zgc:154062

Location

About this transcript

This transcript has 3 exons, is annotated with 12 domains and features, is associated with 268 variant alleles and maps to 211 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000084861.5	cish-201	1421	212aa	ENSDARP00000079296.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q08BW5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000136538.3	cish-202	1038	173aa	ENSDARP00000121026.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QCT0	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000140108.2	cish-203	497	31aa	ENSDARP00000116149.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QCE7	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000140573.2	cish-204	429	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 1,038 bps, Translation length: 173 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000136538.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.