Transcript: ENSDART00000136518.2 CAPN3-201

Description

calpain 3b [Source:ZFIN;Acc:ZDB-GENE-041001-149]

Location

About this transcript

This transcript has 20 exons, is annotated with 33 domains and features, is associated with 83 variant alleles and maps to 154 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000063177.6	CAPN3-202	2994	723aa	ENSDARP00000063176.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QE31	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000136518.2	CAPN3-201	2537	719aa	ENSDARP00000121284.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

Summary

Statistics

Exons: 20, Coding exons: 20, Transcript length: 2,537 bps, Translation length: 719 residues

Version

ENSDART00000136518.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.