Transcript: ENSDART00000136489.2 mctp2a-202

Description

multiple C2 domains, transmembrane 2a [Source:ZFIN;Acc:ZDB-GENE-040724-63]

Gene Synonyms

si:ch211-214d15.1

Location

Chromosome 18: 23,408,073-23,451,378 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 14 domains and features, is associated with 471 variant alleles and maps to 174 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000001414.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000001102.7	mctp2a-201	2828	927aa	ENSDARP00000001617.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R4M9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000189030.1	mctp2a-203	2726	893aa	ENSDARP00000146393.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8PYX9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000193765.1	mctp2a-204	1455	484aa	ENSDARP00000149319.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QCC9	-
ENSDART00000136489.2	mctp2a-202	1264	422aa	ENSDARP00000117751.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QYV1	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 1,264 bps, Translation length: 422 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000136489.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000136489.2 mctp2a-202

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Transcript: ENSDART00000136489.2 mctp2a-202

Summary

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