Transcript: ENSDART00000136488.3 zmat4a-201

Description

zinc finger matrin-type 4 [Source:HGNC Symbol;Acc:HGNC:25844]

Location

Chromosome 5: 27,583,445-27,719,313 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 26 domains and features, is associated with 3469 variant alleles and maps to 196 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000092987.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000180340.1	zmat4a-202	1159	283aa	ENSDARP00000146823.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M1RSK1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000136488.3	zmat4a-201	807	268aa	ENSDARP00000113655.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000181080.1	zmat4a-203	675	224aa	ENSDARP00000148690.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000189071.1	zmat4a-205	450	149aa	ENSDARP00000155994.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000184912.1	zmat4a-204	177	58aa	ENSDARP00000155881.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 807 bps, Translation length: 268 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000136488.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000136488.3 zmat4a-201

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Transcript: ENSDART00000136488.3 zmat4a-201

Summary

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