Transcript: ENSDART00000136472.3 trim3b-202

Description

tripartite motif containing 3b [Source:ZFIN;Acc:ZDB-GENE-070112-1132]

Gene Synonyms

zgc:153967

Location

Chromosome 10: 26,130,856-26,163,989 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 40 domains and features, is associated with 737 variant alleles and maps to 192 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000005397.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000136472.3	trim3b-202	4088	752aa	ENSDARP00000117680.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QY41	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000174797.2	trim3b-204	5635	772aa	ENSDARP00000144354.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286YB14	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000136291.2	trim3b-201	649	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000143734.2	trim3b-203	605	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 4,088 bps, Translation length: 752 residues

Version

ENSDART00000136472.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000136472.3 trim3b-202

Summary

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Transcript: ENSDART00000136472.3 trim3b-202

Summary

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