Transcript: ENSDART00000136444.3 TRAF3IP1-202

Description

TNF receptor-associated factor 3 interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1146]

Location

Chromosome 9: 45,605,410-45,623,647 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 11 domains and features, is associated with 622 variant alleles and maps to 38 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000010300.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000007189.10	TRAF3IP1-201	2241	629aa	ENSDARP00000002437.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000158713.2	TRAF3IP1-203	1935	644aa	ENSDARP00000137079.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IR02	-
ENSDART00000182671.1	TRAF3IP1-204	1914	637aa	ENSDARP00000145260.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8PWH6	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000136444.3	TRAF3IP1-202	790	220aa	ENSDARP00000122130.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 790 bps, Translation length: 220 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000136444.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000136444.3 TRAF3IP1-202

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Transcript: ENSDART00000136444.3 TRAF3IP1-202

Summary

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