Transcript: ENSDART00000136269.2 RIMBP2-201

Description

RIMS binding protein 2b [Source:ZFIN;Acc:ZDB-GENE-040724-96]

Location

Chromosome 8: 43,942,276-44,004,135 reverse strand.

About this transcript

This transcript has 16 exons, is annotated with 43 domains and features, is associated with 1532 variant alleles and maps to 131 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000001154.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000186879.1	RIMBP2-203	3735	1244aa	ENSDARP00000145113.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000136269.2	RIMBP2-201	3498	1165aa	ENSDARP00000116378.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000186449.1	RIMBP2-202	3330	1109aa	ENSDARP00000150404.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000188965.1	RIMBP2-207	3144	1047aa	ENSDARP00000150174.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000001313.9	RIMBP2-204	3126	1041aa	ENSDARP00000001208.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000185935.1	RIMBP2-205	3063	1020aa	ENSDARP00000149760.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000188902.1	RIMBP2-206	2913	970aa	ENSDARP00000150692.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 3,498 bps, Translation length: 1,165 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000136269.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000136269.2 RIMBP2-201

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Transcript: ENSDART00000136269.2 RIMBP2-201

Summary

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