Transcript: ENSDART00000136131.3 ldhbb-203

Description

lactate dehydrogenase Bb [Source:ZFIN;Acc:ZDB-GENE-040718-176]

Location

Chromosome 25: 3,327,071-3,336,047 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 17 domains and features, is associated with 496 variant alleles and maps to 238 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000071076.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000104866.5	ldhbb-201	1636	334aa	ENSDARP00000095636.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B2GRW6 Q6DGK2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000181143.1	ldhbb-205	1025	334aa	ENSDARP00000154861.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B2GRW6 Q6DGK2	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000136131.3	ldhbb-203	923	300aa	ENSDARP00000118106.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000133243.2	ldhbb-202	517	134aa	ENSDARP00000120276.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000140133.2	ldhbb-204	561	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 923 bps, Translation length: 300 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000136131.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000136131.3 ldhbb-203

Summary

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Transcript: ENSDART00000136131.3 ldhbb-203

Summary

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