Transcript: ENSDART00000136119.3 nphs2-202

Description

NPHS2 stomatin family member, podocin [Source:ZFIN;Acc:ZDB-GENE-051102-2]

Gene Synonyms

nphs2l, podocin, si:dkey-171o17.6

Location

About this transcript

This transcript has 8 exons, is annotated with 23 domains and features, is associated with 384 variant alleles and maps to 215 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000136119.3	nphs2-202	1491	406aa	ENSDARP00000119695.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1L982	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000062891.6	nphs2-201	1479	391aa	ENSDARP00000062890.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4FVJ0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000144505.2	nphs2-203	535	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,491 bps, Translation length: 406 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000136119.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.