Transcript: ENSDART00000136000.4 stab2-202

Description

stabilin 2 [Source:ZFIN;Acc:ZDB-GENE-041210-336]

Location

Chromosome 4: 10,721,795-10,763,547 forward strand.

About this transcript

This transcript has 68 exons, is annotated with 171 domains and features, is associated with 1721 variant alleles and maps to 227 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000045748.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000136000.4	stab2-202	8055	2543aa	ENSDARP00000116540.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6P8Y7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000067253.5	stab2-201	7527	2508aa	ENSDARP00000067252.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000181470.1	stab2-204	2159	611aa	ENSDARP00000146807.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000150713.2	stab2-203	301	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 68, Coding exons: 68, Transcript length: 8,055 bps, Translation length: 2,543 residues

Version

ENSDART00000136000.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000136000.4 stab2-202

Summary

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Transcript: ENSDART00000136000.4 stab2-202

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