Transcript: ENSDART00000135888.2 rrp9-201

Description

ribosomal RNA processing 9, U3 small nucleolar RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-060427-1]

Gene Synonyms

rnu3ip2

Location

About this transcript

This transcript has 15 exons, is annotated with 34 domains and features, is associated with 732 variant alleles and maps to 188 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000189782.1	rrp9-202	1753	471aa	ENSDARP00000147720.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8RL46	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000135888.2	rrp9-201	1645	468aa	ENSDARP00000121702.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R3Q7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 15, Coding exons: 15, Transcript length: 1,645 bps, Translation length: 468 residues

Version

ENSDART00000135888.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.