Transcript: ENSDART00000135874.2 si:ch211-13k12.2-203

Description

si:ch211-13k12.2 [Source:ZFIN;Acc:ZDB-GENE-061207-5]

Location

Chromosome 18: 25,572,222-25,645,680 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 8 domains and features, is associated with 1569 variant alleles and maps to 104 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000038121.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000099511.4	si:ch211-13k12.2-201	2388	593aa	ENSDARP00000090285.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RAF7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000186890.1	si:ch211-13k12.2-205	2340	577aa	ENSDARP00000145057.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000135874.2	si:ch211-13k12.2-203	923	307aa	ENSDARP00000115529.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000133029.2	si:ch211-13k12.2-202	563	187aa	ENSDARP00000115359.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000138861.2	si:ch211-13k12.2-204	730	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 923 bps, Translation length: 307 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000135874.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000135874.2 si:ch211-13k12.2-203

Summary

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Transcript: ENSDART00000135874.2 si:ch211-13k12.2-203

Summary

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