Transcript: ENSDART00000135838.2 ptp4a2b-203

Description

protein tyrosine phosphatase 4A2b [Source:ZFIN;Acc:ZDB-GENE-041114-111]

Location

Chromosome 19: 35,459,902-35,492,693 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 5 domains and features, is associated with 536 variant alleles and maps to 175 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000035676.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000051745.5	ptp4a2b-201	2222	168aa	ENSDARP00000051744.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6TLG9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000177052.2	ptp4a2b-204	5641	174aa	ENSDARP00000144262.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5U3R3	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000135838.2	ptp4a2b-203	816	152aa	ENSDARP00000121313.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000131786.2	ptp4a2b-202	497	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 816 bps, Translation length: 152 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000135838.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000135838.2 ptp4a2b-203

Summary

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Transcript: ENSDART00000135838.2 ptp4a2b-203

Summary

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