Transcript: ENSDART00000135723.4 SEMA6C-201

Description

semaphorin 6Cb [Source:ZFIN;Acc:ZDB-GENE-040724-119]

Location

About this transcript

This transcript has 18 exons, is annotated with 21 domains and features, is associated with 69 variant alleles and maps to 153 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000160555.2	SEMA6C-203	7420	1064aa	ENSDARP00000137144.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E3W9A6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000000198.10	SEMA6C-202	3295	1064aa	ENSDARP00000000198.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E3W9A6	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000135723.4	SEMA6C-201	2089	638aa	ENSDARP00000118170.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 18, Coding exons: 17, Transcript length: 2,089 bps, Translation length: 638 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000135723.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.