Transcript: ENSDART00000135651.3 EIF3E-201

Description

eukaryotic translation initiation factor 3, subunit E, b [Source:ZFIN;Acc:ZDB-GENE-050208-283]

Location

Chromosome 19: 22,624,269-22,664,107 reverse strand.

About this transcript

This transcript has 15 exons, is annotated with 1 domain and feature, is associated with 548 variant alleles and maps to 256 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000002549.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000023926.11	EIF3E-205	3883	446aa	ENSDARP00000003276.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QHS3	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000136295.4	EIF3E-204	1679	439aa	ENSDARP00000120794.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000135651.3	EIF3E-201	1895	401aa	ENSDARP00000118894.1	Nonsense mediated decay	Z4YIU6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000150189.2	EIF3E-203	754	63aa	ENSDARP00000123842.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000150052.3	EIF3E-202	697	91aa	ENSDARP00000124720.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 15, Coding exons: 12, Transcript length: 1,895 bps, Translation length: 401 residues

Version

ENSDART00000135651.3

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000135651.3 EIF3E-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000135651.3 EIF3E-201

Summary

About Us

Get help

Our sister sites

Follow us