Transcript: ENSDART00000135647.4 si:ch211-113e8.10-201

Description

si:ch211-113e8.10 [Source:ZFIN;Acc:ZDB-GENE-090313-11]

Location

Chromosome 1: 40,116,572-40,132,831 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 48 domains and features, is associated with 387 variant alleles and maps to 108 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000079631.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000135647.4	si:ch211-113e8.10-201	2911	792aa	ENSDARP00000115246.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6NIE2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000146917.2	si:ch211-113e8.10-202	649	216aa	ENSDARP00000123632.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7ZDB7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000148234.2	si:ch211-113e8.10-203	198	13aa	ENSDARP00000120750.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7ZDB8	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 2,911 bps, Translation length: 792 residues

Version

ENSDART00000135647.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000135647.4 si:ch211-113e8.10-201

Summary

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Transcript: ENSDART00000135647.4 si:ch211-113e8.10-201

Summary

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