Transcript: ENSDART00000135620.2 hmgn3-202

Description

high mobility group nucleosomal binding domain 3 [Source:ZFIN;Acc:ZDB-GENE-041114-180]

Gene Synonyms

fa04b03, trip7, wu:fa04b03, zgc:92355

Location

About this transcript

This transcript has 7 exons, is annotated with 15 domains and features, is associated with 492 variant alleles and maps to 209 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000135620.2	hmgn3-202	1183	120aa	ENSDARP00000113097.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QH74	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000053367.8	hmgn3-201	1124	98aa	ENSDARP00000053366.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5U381	-
ENSDART00000179908.1	hmgn3-203	360	120aa	ENSDARP00000145853.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,183 bps, Translation length: 120 residues

Version

ENSDART00000135620.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.