Transcript: ENSDART00000135406.3 chl1a-203

Description

cell adhesion molecule L1-like a [Source:ZFIN;Acc:ZDB-GENE-090313-201]

Location

Chromosome 23: 11,347,313-11,448,747 forward strand.

About this transcript

This transcript has 26 exons, is annotated with 74 domains and features, is associated with 1658 variant alleles and maps to 143 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000077881.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000135406.3	chl1a-203	4565	1153aa	ENSDARP00000116141.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QCF0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000111028.3	chl1a-201	8097	1153aa	ENSDARP00000103902.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QCF0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000163083.2	chl1a-204	4415	1153aa	ENSDARP00000136700.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QCF0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000131996.2	chl1a-202	370	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 26, Coding exons: 25, Transcript length: 4,565 bps, Translation length: 1,153 residues

Version

ENSDART00000135406.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000135406.3 chl1a-203

Summary

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Transcript: ENSDART00000135406.3 chl1a-203

Summary

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