Transcript: ENSDART00000135331.2 scn12aa-202

Description

sodium channel, voltage gated, type XII, alpha a [Source:ZFIN;Acc:ZDB-GENE-060908-2]

Gene Synonyms

scn5Laa, zmp:0000001002, zscn6

Location

About this transcript

This transcript has 1 exon, is annotated with 3 domains and features, is associated with 157 variant alleles and maps to 53 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000128198.3	scn12aa-201	5799	1932aa	ENSDARP00000107413.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R3Q5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000135331.2	scn12aa-202	267	89aa	ENSDARP00000113912.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8WHR2	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 267 bps, Translation length: 89 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000135331.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.