Transcript: ENSDART00000135296.2 ncoa5-202

Description

nuclear receptor coactivator 5 [Source:ZFIN;Acc:ZDB-GENE-040912-155]

Gene Synonyms

zgc:92194

Location

About this transcript

This transcript has 5 exons, is associated with 180 variant alleles and maps to 84 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000018270.7	ncoa5-201	1911	479aa	ENSDARP00000014595.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q66HY6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000135296.2	ncoa5-202	715	149aa	ENSDARP00000118898.1	Nonsense mediated decay	F1Q8V1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000141700.2	ncoa5-203	733	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 715 bps, Translation length: 149 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000135296.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.