Transcript: ENSDART00000135239.3 brd3a-203

Description

bromodomain containing 3a [Source:ZFIN;Acc:ZDB-GENE-030131-6141]

Gene Synonyms

brd3, fc01d09, fc74a08, fi36b10, wu:fa13h06, wu:fc01d09, wu:fc74a08, wu:fi04h10, wu:fi36b10

Location

About this transcript

This transcript has 12 exons, is annotated with 41 domains and features, is associated with 351 variant alleles and maps to 350 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000135239.3	brd3a-203	2835	683aa	ENSDARP00000117023.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QQP6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000126672.3	brd3a-201	1891	514aa	ENSDARP00000107943.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F3R5	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000137050.2	brd3a-204	787	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000140037.2	brd3a-205	755	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000128915.3	brd3a-202	749	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 2,835 bps, Translation length: 683 residues

Version

ENSDART00000135239.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.