Transcript: ENSDART00000135214.3 si:dkeyp-34c12.1-203

Description

si:dkeyp-34c12.1 [Source:ZFIN;Acc:ZDB-GENE-030131-5347]

Location

Chromosome 22: 28,774,022-28,777,557 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 7 domains and features, is associated with 158 variant alleles and maps to 167 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000071083.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000188206.1	si:dkeyp-34c12.1-204	5084	561aa	ENSDARP00000148865.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QBC2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000005112.6	si:dkeyp-34c12.1-201	1364	293aa	ENSDARP00000026801.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000135214.3	si:dkeyp-34c12.1-203	917	244aa	ENSDARP00000119296.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000131761.2	si:dkeyp-34c12.1-202	593	136aa	ENSDARP00000116753.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 917 bps, Translation length: 244 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000135214.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000135214.3 si:dkeyp-34c12.1-203

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Transcript: ENSDART00000135214.3 si:dkeyp-34c12.1-203

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