Transcript: ENSDART00000135197.2 zgc:112980-202

Description

zgc:112980 [Source:ZFIN;Acc:ZDB-GENE-050306-1]

Gene Synonyms

wu:fa17g06, wu:fi33h01

Location

Chromosome 1: 8,549,849-8,553,165 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 2 domains and features, is associated with 478 variant alleles and maps to 139 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000037739.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000054981.5	zgc:112980-201	2672	715aa	ENSDARP00000054980.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1REK2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000135197.2	zgc:112980-202	785	229aa	ENSDARP00000117683.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QDV8	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000140398.2	zgc:112980-203	749	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000147763.2	zgc:112980-206	432	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000146333.2	zgc:112980-204	951	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000147640.2	zgc:112980-205	374	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 785 bps, Translation length: 229 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000135197.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000135197.2 zgc:112980-202

Summary

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Transcript: ENSDART00000135197.2 zgc:112980-202

Summary

About Us

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