Transcript: ENSDART00000135076.2 SCRN3-202

Description

secernin 3 [Source:ZFIN;Acc:ZDB-GENE-030131-4783]

Location

About this transcript

This transcript has 5 exons, is annotated with 3 domains and features, is associated with 219 variant alleles and maps to 63 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000016710.9	SCRN3-203	2397	417aa	ENSDARP00000014414.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q803W1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000181340.1	SCRN3-204	3320	438aa	ENSDARP00000147919.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000135076.2	SCRN3-202	792	244aa	ENSDARP00000120788.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000137706.2	SCRN3-201	903	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 792 bps, Translation length: 244 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000135076.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.