Transcript: ENSDART00000134912.3 tox-203

Description

thymocyte selection-associated high mobility group box [Source:ZFIN;Acc:ZDB-GENE-070912-181]

Gene Synonyms

sb:eu868, si:ch211-198j13.2

Location

Chromosome 2: 21,982,985-22,071,071 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 7 domains and features, is associated with 1183 variant alleles and maps to 64 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000032317.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000190722.1	tox-204	6371	540aa	ENSDARP00000148167.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q9T1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000044371.8	tox-201	3513	539aa	ENSDARP00000044370.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B0V356	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000134912.3	tox-203	920	203aa	ENSDARP00000121193.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B0V357	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000132039.2	tox-202	675	225aa	ENSDARP00000121003.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R3W3	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 920 bps, Translation length: 203 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000134912.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000134912.3 tox-203

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Transcript: ENSDART00000134912.3 tox-203

Summary

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