Transcript: ENSDART00000134708.3 SCLT1-202

Description

sodium channel and clathrin linker 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3278]

Location

Chromosome 1: 12,384,276-12,394,101 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 5 domains and features, is associated with 28 variant alleles and maps to 66 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000057248.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000146067.3	SCLT1-201	2635	683aa	ENSDARP00000122898.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7EZ46	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000079782.7	SCLT1-204	2060	683aa	ENSDARP00000074234.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7EZ46	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000144596.2	SCLT1-203	640	113aa	ENSDARP00000113055.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000134708.3	SCLT1-202	580	178aa	ENSDARP00000120177.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 580 bps, Translation length: 178 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000134708.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000134708.3 SCLT1-202

Summary

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Transcript: ENSDART00000134708.3 SCLT1-202

Summary

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