Summary
Sequence
- Exons
- cDNA
- Protein
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

Configure this page

Transcript: ENSDART00000134692.2 pcdh1a-202

Description

protocadherin 1 [Source:HGNC Symbol;Acc:HGNC:8655]

Location

About this transcript

This transcript has 2 exons, is associated with 252 variant alleles and maps to 49 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000139733.3	pcdh1a-203	4201	1190aa	ENSDARP00000120435.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6NJQ3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000091004.6	pcdh1a-201	6157	1018aa	ENSDARP00000085437.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000134692.2	pcdh1a-202	555	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 555 bps,

Version

ENSDART00000134692.2

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.