Transcript: ENSDART00000134645.2 sync-202

Description

syncoilin, intermediate filament protein [Source:ZFIN;Acc:ZDB-GENE-060503-747]

Gene Synonyms

si:dkeyp-25a3.7

Location

Chromosome 19: 30,990,815-30,994,160 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 6 domains and features, is associated with 345 variant alleles and maps to 124 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000035944.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000052169.7	sync-201	2838	451aa	ENSDARP00000052168.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RA90	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000193376.1	sync-203	4309	396aa	ENSDARP00000144886.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q2D3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000134645.2	sync-202	807	242aa	ENSDARP00000123197.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LXD3	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 807 bps, Translation length: 242 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000134645.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000134645.2 sync-202

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Transcript: ENSDART00000134645.2 sync-202

Summary

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