Transcript: ENSDART00000134633.2 si:dkey-40c11.2-203

Description

si:dkey-40c11.2 [Source:ZFIN;Acc:ZDB-GENE-060526-300]

Gene Synonyms

cb540, fb76h05, sb:cb540, si:dkey-40c11.4, wu:fb76h05

Location

Chromosome 5: 43,603,794-43,608,280 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 14 domains and features, is associated with 166 variant alleles and maps to 109 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000032482.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000190254.1	si:dkey-40c11.2-204	2582	771aa	ENSDARP00000149939.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8RPF6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000097618.5	si:dkey-40c11.2-201	2504	745aa	ENSDARP00000088388.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QWF1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000133006.2	si:dkey-40c11.2-202	1400	390aa	ENSDARP00000115974.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2BI18	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000134633.2	si:dkey-40c11.2-203	691	171aa	ENSDARP00000121134.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R5E4	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 691 bps, Translation length: 171 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000134633.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000134633.2 si:dkey-40c11.2-203

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Transcript: ENSDART00000134633.2 si:dkey-40c11.2-203

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