Transcript: ENSDART00000134542.3 csde1-202

Description

cold shock domain containing E1, RNA-binding [Source:NCBI gene (formerly Entrezgene);Acc:336679]

Location

Chromosome 8: 22,521,729-22,542,545 reverse strand.

About this transcript

This transcript has 20 exons, is annotated with 43 domains and features, is associated with 349 variant alleles and maps to 310 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000074758.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000134542.3	csde1-202	4654	798aa	ENSDARP00000116773.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QFH8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000185981.1	csde1-208	3398	874aa	ENSDARP00000156947.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QTF0	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000183297.1	csde1-207	3383	869aa	ENSDARP00000155984.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000182588.1	csde1-206	2490	829aa	ENSDARP00000156900.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000140606.2	csde1-204	1131	377aa	ENSDARP00000116278.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000144041.3	csde1-205	1052	278aa	ENSDARP00000112965.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000132680.2	csde1-201	604	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000135640.2	csde1-203	582	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 20, Coding exons: 18, Transcript length: 4,654 bps, Translation length: 798 residues

Version

ENSDART00000134542.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000134542.3 csde1-202

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Transcript: ENSDART00000134542.3 csde1-202

Summary

About Us

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