Transcript: ENSDART00000134484.2 si:dkey-230p4.1-203

Description

si:dkey-230p4.1 [Source:ZFIN;Acc:ZDB-GENE-081104-380]

Location

Chromosome 9: 12,934,536-12,944,019 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 13 domains and features, is associated with 38 variant alleles and maps to 160 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000020834.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000102348.5	si:dkey-230p4.1-201	8328	2775aa	ENSDARP00000093124.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R371	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000134484.2	si:dkey-230p4.1-203	980	327aa	ENSDARP00000112723.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000139377.2	si:dkey-230p4.1-205	802	233aa	ENSDARP00000119455.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000135797.2	si:dkey-230p4.1-204	580	193aa	ENSDARP00000120730.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000133967.2	si:dkey-230p4.1-202	354	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 980 bps, Translation length: 327 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000134484.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000134484.2 si:dkey-230p4.1-203

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Transcript: ENSDART00000134484.2 si:dkey-230p4.1-203

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