Transcript: ENSDART00000134467.2 parpbp-202

Description

PARP1 binding protein [Source:ZFIN;Acc:ZDB-GENE-060421-5714]

Gene Synonyms

si:ch211-260p3.2, zgc:136263

Location

Chromosome 4: 17,338,735-17,353,100 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 7 domains and features, is associated with 312 variant alleles and maps to 179 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000029944.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000041529.8	parpbp-201	4071	579aa	ENSDARP00000041528.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	J9JI04	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000189019.1	parpbp-203	2223	579aa	ENSDARP00000152576.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	J9JI04	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000134467.2	parpbp-202	2219	568aa	ENSDARP00000119829.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 2,219 bps, Translation length: 568 residues

Version

ENSDART00000134467.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000134467.2 parpbp-202

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Transcript: ENSDART00000134467.2 parpbp-202

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