Transcript: ENSDART00000134447.2 rcan1a-202

Description

regulator of calcineurin 1a [Source:ZFIN;Acc:ZDB-GENE-040801-135]

Gene Synonyms

zgc:100963

Location

About this transcript

This transcript has 4 exons, is annotated with 6 domains and features, is associated with 143 variant alleles and maps to 193 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000020638.8	rcan1a-201	2773	210aa	ENSDARP00000017482.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B0R069	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000134447.2	rcan1a-202	814	166aa	ENSDARP00000114420.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B0R065	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000138963.2	rcan1a-203	781	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000144141.2	rcan1a-204	1019	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 814 bps, Translation length: 166 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000134447.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.