Transcript: ENSDART00000134396.2 rpain-203

Description

RPA interacting protein [Source:ZFIN;Acc:ZDB-GENE-060825-212]

Location

About this transcript

This transcript has 6 exons, is annotated with 4 domains and features, is associated with 758 variant alleles and maps to 99 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000129329.4	rpain-202	882	225aa	ENSDARP00000108894.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QKJ6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000091711.6	rpain-201	835	225aa	ENSDARP00000086144.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QKJ6	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000134396.2	rpain-203	698	202aa	ENSDARP00000116714.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 698 bps, Translation length: 202 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000134396.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.