Transcript: ENSDART00000134393.2 arhgef9a-201

Description

Cdc42 guanine nucleotide exchange factor (GEF) 9a [Source:ZFIN;Acc:ZDB-GENE-070705-271]

Location

About this transcript

This transcript has 5 exons, is annotated with 22 domains and features, is associated with 98 variant alleles and maps to 133 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000143878.4	arhgef9a-203	3022	549aa	ENSDARP00000118893.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QHS5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000182907.1	arhgef9a-204	1548	516aa	ENSDARP00000145990.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000134393.2	arhgef9a-201	890	250aa	ENSDARP00000112792.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000142199.2	arhgef9a-202	679	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 890 bps, Translation length: 250 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000134393.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.