Transcript: ENSDART00000134360.3 lhx2a-202

Description

LIM homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-091118-109]

Location

Chromosome 21: 8,407,545-8,422,363 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 30 domains and features, is associated with 472 variant alleles and maps to 229 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000037964.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000134360.3	lhx2a-202	1366	328aa	ENSDARP00000121419.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QBI8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000055329.6	lhx2a-201	1351	327aa	ENSDARP00000055328.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R0M6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000138040.2	lhx2a-203	442	147aa	ENSDARP00000113469.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,366 bps, Translation length: 328 residues

Version

ENSDART00000134360.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000134360.3 lhx2a-202

Summary

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Transcript: ENSDART00000134360.3 lhx2a-202

Summary

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